Systems Biology and Computational Proteomics 2006: San Diego, CA, USA

• Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp:
  Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation. 1-13
  
• Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader:
  Probabilistic Paths for Protein Complex Inference. 14-28
  
• Hans-Michael Kaltenbach, Sebastian Böcker, Sven Rahmann:
  Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting. 29-41
  
• Céline Lefebvre, Wei Keat Lim, Katia Basso, Riccardo Dalla Favera, Andrea Califano:
  A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells. 42-56
  
• Jianhua Ruan, Weixiong Zhang:
  Identification and Evaluation of Functional Modules in Gene Co-expression Networks. 57-76
  
• Mingzhou (Joe) Song, Z. Lewis Liu:
  A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion Inhibitor HMF for Ethanologenic Yeast. 77-95
  
• Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang:
  A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry. 96-107
  
• Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram:
  De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis. 108-118
  
• Daniel P. Fasulo, Anne-Katrin Emde, Lu-Yong Wang, Karin Noy, Nathan Edwards:
  Alignment of Mass Spectrometry Data by Clique Finding and Optimization. 119-129