5. RECOMB 2001: Montréal, Québec, Canada

Proceedings of the Fifth Annual International Conference on Computational Biology, April 22-25, 2001, Montreal, Québec, Canada. ACM, 2001

Mark Adams:
The sequence of the human genome (abstract only). 1
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Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. 2-11
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Yoseph Barash, Nir Friedman:
Context-specific Bayesian clustering for gene expression data. 12-21
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Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow:
An optimal procedure for gap closing in whole genome shotgun sequencing. 22-30
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Amir Ben-Dor, Nir Friedman, Zohar Yakhini:
Class discovery in gene expression data. 31-38
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Yonatan Bilu, Michal Linial:
On the predictive power of sequence similarity in yeast. 39-48
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Mathieu Blanchette:
Algorithms for phylogenetic footprinting. 49-58
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Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, Bonnie Berger:
Predicting the beta-helix fold from protein sequence data. 59-67
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Roger Brent:
Information processing by cells and biologists (abstract only). 68
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Jeremy Buhler, Martin Tompa:
Finding motifs using random projections. 69-76
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Ralf Bundschuh:
Rapid significance estimation in local sequence alignment with gaps. 77-85
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Harmen J. Bussemaker, Hao Li, Eric D. Siggia:
Regulatory element detection using correlation with expression (abstract only). 86
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Ting Chen:
Gene-finding via tandem mass spectrometry. 87-94
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Ting Chen, Jacob D. Jaffe, George M. Church:
Algorithms for identifying protein cross-links via tandem mass spectrometry. 95-102
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George M. Church:
Hunger for new technologies, metrics, and spatiotemporal models in functional genomic (abstract only). 103
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Miklós Csürös:
Fast recovery of evolutionary trees with thousands of nodes. 104-113
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Alon Efrat, Frank Hoffmann, Klaus Kriegel, Christof Schultz, Carola Wenk:
Geometric algorithms for the analysis of 2D-electrophoresis gels. 114-123
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Vladimir Filkov, Steven Skiena, Jizu Zhi:
Analysis techniques for microarray time-series data. 124-131
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Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko:
A structural EM algorithm for phylogenetic inference. 132-140
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Alan M. Frieze, Bjarni V. Halldórsson:
Optimal sequencing by hybridization in rounds. 141-148
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Michael T. Hallett, Jens Lagergren:
Efficient algorithms for lateral gene transfer problems. 149-156
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Daniel H. Huson, Knut Reinert, Eugene W. Myers:
The greedy path-merging algorithm for sequence assembly. 157-163
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Christopher James Langmead, Bruce Randall Donald:
Extracting structural information using time-frequency analysis of protein NMR data. 164-175
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John D. Kececioglu, Jun Ju:
Separtating repeats in DNA sequence assembly. 176-183
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Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof:
A NMR-spectra-based scoring function for protein docking. 184-192
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Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail:
101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem. 193-202
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B. Franz Lang:
Comparative analysis of organelle genomes, a biologist's view of computational challenges (abstract only). 203
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Wentian Li:
DNA segmentation as a model selection process. 204-210
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Guohui Lin, Bin Ma, Kaizhong Zhang:
Edit distance between two RNA structures. 211-220
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Klaus Lindpaintner:
Genetics and genemoics: impact on drug discovery and development. 221-222
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Yvonne C. Martin:
The role of computational chemistry in translating genomic information into bioactive small molecules (abstract only). 223
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Gene Myers:
Comparing sequence scaffolds. 224-230
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Gonzalo Navarro, Mathieu Raffinot:
Fast and simple character classes and bounded gaps pattern matching, with application to protein searching. 231-240
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Lior Pachter, Marina Alexandersson, Simon Cawley:
Applications of generalized pair hidden Markov models to alignment and gene finding problems. 241-248
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Paul Pavlidis, Jason Weston, Jinsong Cai, William Noble Grundy:
Gene functional classification from heterogeneous data. 249-255
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Pavel A. Pevzner, Haixu Tang, Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing. 256-267
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Mark Ptashne:
Imposing specificity by regulated localization (abstract only). 268
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Ron Shamir, Dekel Tsur:
Large scale sequencing by hybridization. 269-277
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Phillip A. Sharp:
RNA biology and the genome (abstract only). 278
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Mona Singh, Peter S. Kim:
Towards predicting coiled-coil protein interactions. 279-286
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Guang Song, Nancy M. Amato:
Using motion planning to study protein folding pathways. 287-296
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Mengxiang Tang, Michael S. Waterman, Shibu Yooseph:
Zinc finger gene clusters and tandem gene duplication. 297-304
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Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. 305-312
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Matthias Wilm:
Creating the backbone for the virtual cell: cell mapping projects on the run (abstract only). 313
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