RECOMB-CG 2009: Budapest, Hungary

• Eric Tannier:
  Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods. 1-12
  
• Zhenyu Yang, David Sankoff:
  Natural Parameter Values for Generalized Gene Adjacency. 13-23
  
• Aïda Ouangraoua, Anne Bergeron:
  Parking Functions, Labeled Trees and DCJ Sorting Scenarios. 24-35
  
• Marília D. V. Braga, Jens Stoye:
  Counting All DCJ Sorting Scenarios. 36-47
  
• Cedric Chauve, Utz-Uwe Haus, Tamon Stephen, Vivija P. You:
  Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction. 48-58
  
• Guillaume Blin, Jens Stoye:
  Finding Nested Common Intervals Efficiently. 59-69
  
• Andrew Wei Xu:
  DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions. 70-83
  
• Paul Medvedev, Jens Stoye:
  Rearrangement Models and Single-Cut Operations. 84-97
  
• Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller:
  Aligning Two Genomic Sequences That Contain Duplications. 98-110
  
• Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller:
  Inferring the Recent Duplication History of a Gene Cluster. 111-125
  
• Sébastien Angibaud, Guillaume Fertin, Annelyse Thévenin, Stéphane Vialette:
  Pseudo Boolean Programming for Partially Ordered Genomes. 126-137
  
• João Delgado, Inês Lynce, Vasco M. Manquinho:
  Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization. 138-149
  
• Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel:
  Reconstructing Histories of Complex Gene Clusters on a Phylogeny. 150-163
  
• Tamir Tuller, Hadas Birin, Martin Kupiec, Eytan Ruppin:
  Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples. 164-180
  
• Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller:
  Whole-Genome Analysis of Gene Conversion Events. 181-192
  
• Zaky Adam, David Sankoff:
  A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. 193-204
  
• Guylaine Poisson, Mahdi Belcaid, Anne Bergeron:
  Comparative Genomics and Extensive Recombinations in Phage Communities. 205-216
  
• Dale N. Richardson, Thomas Wiehe:
  Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana. 217-228
  
• Xiao Liu, Neil D. Clarke:
  Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. 229-240