Comparative Genomics / RCG 2006: Montreal, Canada

• Behshad Behzadi, Martin Vingron:
  Reconstructing Domain Compositions of Ancestral Multi-domain Proteins. 1-10
  
• Nan Song, R. D. Sedgewick, Dannie Durand:
  Domain Architecture in Homolog Identification. 11-23
  
• Guillaume Blin, Annie Chateau, Cedric Chauve, Yannick Gingras:
  Inferring Positional Homologs with Common Intervals of Sequences. 24-38
  
• Damian Wójtowicz, Jerzy Tiuryn:
  On Genome Evolution with Accumulated Change and Innovation. 39-50
  
• Andrew Wei Xu, Chunfang Zheng, David Sankoff:
  Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. 51-62
  
• Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff:
  Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. 63-74
  
• Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Stéphane Vialette:
  How Pseudo-boolean Programming Can Help Genome Rearrangement Distance Computation. 75-86
  
• Michal Ozery-Flato, Ron Shamir:
  Sorting by Translocations Via Reversals Theory. 87-98
  
• Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk:
  Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. 99-112
  
• Éric Gaul, Mathieu Blanchette:
  Ordering Partially Assembled Genomes Using Gene Arrangements. 113-128
  
• Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel:
  Evolution of Tandemly Repeated Sequences Through Duplication and Inversion. 129-140
  
• Laxmi Parida:
  A PQ Framework for Reconstructions of Common Ancestors and Phylogeny. 141-155
  
• Jasmin Coulombe-Huntington, Jacek Majewski:
  Intron Loss Dynamics in Mammals. 156-170
  
• Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette:
  Finding Maximum Likelihood Indel Scenarios. 171-185
  
• Perry Evans, Greg Donahue, Sridhar Hannenhalli:
  Conservation Patterns in cis-Elements Reveal Compensatory Mutations. 186-199
  
• Nilanjana Banerjee, Andrea Califano:
  Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps. 200-214
  
• Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh:
  Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer. 215-229