| * | 2009 |
| 11 | EE | Nikolay Vyahhi,
Adrien Goëffon,
Macha Nikolski,
David James Sherman:
Swarming along the evolutionary branches sheds light on genome rearrangement scenarios.
GECCO 2009: 241-246 |
| 10 | EE | Macha Nikolski,
David James Sherman:
Family relationships: should consensus reign? - consensus clustering for protein families.
Bioinformatics 25(17): 2294 (2009) |
| 9 | EE | David James Sherman,
Tiphaine Martin,
Macha Nikolski,
Cyril Cayla,
Jean-Luc Souciet,
Pascal Durrens:
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.
Nucleic Acids Research 37(Database-Issue): 550-554 (2009) |
| 2008 |
| 8 | EE | Adrien Goëffon,
Macha Nikolski,
David James Sherman:
An efficient probabilistic population-based descent for the median genome problem.
GECCO 2008: 315-322 |
| 2007 |
| 7 | EE | Macha Nikolski,
David James Sherman:
Family relationships: should consensus reign? - consensus clustering for protein families.
Bioinformatics 23(2): 71-76 (2007) |
| 2006 |
| 6 | EE | David James Sherman,
Pascal Durrens,
Florian Iragne,
Emmanuelle Beyne,
Macha Nikolski,
Jean-Luc Souciet:
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts.
Nucleic Acids Research 34(Database-Issue): 432-435 (2006) |
| 2005 |
| 5 | EE | Florian Iragne,
Macha Nikolski,
Bertrand Mathieu,
David Auber,
David James Sherman:
ProViz: protein interaction visualization and exploration.
Bioinformatics 21(2): 272-274 (2005) |
| 2004 |
| 4 | | David James Sherman,
Pascal Durrens,
Emmanuelle Beyne,
Macha Nikolski:
Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.
Nucleic Acids Research 32(Database-Issue): 315-318 (2004) |
| 3 | | Henning Hermjakob,
Luisa Montecchi-Palazzi,
Chris Lewington,
Sugath Mudali,
Samuel Kerrien,
Sandra E. Orchard,
Martin Vingron,
Bernd Roechert,
Peter Roepstorff,
Alfonso Valencia,
Hanah Margalit,
John Armstrong,
Amos Bairoch,
Gianni Cesareni,
David James Sherman,
Rolf Apweiler:
IntAct: an open source molecular interaction database.
Nucleic Acids Research 32(Database-Issue): 452-455 (2004) |
| 1998 |
| 2 | EE | Macha Nikolskaïa,
Antoine Rauzy,
David James Sherman:
Almana: A BDD Minimization Tool Integrating Heuristic and Rewriting Methods.
FMCAD 1998: 100-114 |
| 1 | EE | David James Sherman,
Nicolas Magnier:
Factotum: Automatic and Systematic Sharing Support for Systems Analyzers.
TACAS 1998: 249-262 |