dblp.uni-trier.dewww.uni-trier.de

Alex Bateman Vis

List of publications from the DBLP Bibliography Server - FAQ
Coauthor Index - Ask others: ACM DL/Guide - CiteSeerX - CSB - MetaPress - Google - Bing - Yahoo

*2009
49EEAlex Bateman, Matt Wood: Cloud computing. Bioinformatics 25(12): 1475 (2009)
48EEAlex Bateman, Robert D. Finn, Peter J. Sims, Therese Wiedmer, Andreas Biegert, Johannes Söding: Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics 25(2): 159-162 (2009)
47EEAlex Bateman, John Quackenbush: Editorial. Bioinformatics 25(4): 429 (2009)
46EEPaul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman: Rfam: updates to the RNA families database. Nucleic Acids Research 37(Database-Issue): 136-140 (2009)
45EESarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: InterPro: the integrative protein signature database. Nucleic Acids Research 37(Database-Issue): 211-215 (2009)
2008
44EEJonathan D. Wren, Alex Bateman: Databases, data tombs and dust in the wind. Bioinformatics 24(19): 2127-2128 (2008)
43EEStephen John Sammut, Robert D. Finn, Alex Bateman: Pfam 10 years on: 10 000 families and still growing. Briefings in Bioinformatics 9(3): 210-219 (2008)
42EEAlex Bateman: Editorial. Nucleic Acids Research 36(Database-Issue): 1 (2008)
41EERobert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
2007
40EEJaina Mistry, Alex Bateman, Robert D. Finn: Predicting active site residue annotations in the Pfam database. BMC Bioinformatics 8: (2007)
39EEBenjamin Schuster-Böckler, Alex Bateman: Reuse of structural domain-domain interactions in protein networks. BMC Bioinformatics 8: (2007)
38EEAlfonso Valencia, Alex Bateman: Editorial. Bioinformatics 23(2): 133 (2007)
37EEAlex Bateman, Robert D. Finn: SCOOP: a simple method for identification of novel protein superfamily relationships. Bioinformatics 23(7): 809-814 (2007)
36EEAlex Bateman: Editorial. Nucleic Acids Research 35(Database-Issue): 1-2 (2007)
35EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)
2006
34EEAlex Bateman: Bioinformatics - The new home for protein sequence motifs. Bioinformatics 22(1): 2 (2006)
33EEAlfonso Valencia, Alex Bateman: Software patents in Bioinformatics. Bioinformatics 22(12): 1415 (2006)
32EEAlex Bateman, Alfonso Valencia: Structural genomics meets computational biology. Bioinformatics 22(19): 2319 (2006)
31EEAlex Bateman: EDITORIAL. Nucleic Acids Research 34(Database-Issue): 1 (2006)
30EESam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright: miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research 34(Database-Issue): 140-144 (2006)
29EERobert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
2005
28EEAlfonso Valencia, Alex Bateman: Increasing the Impact of Bioinformatics. Bioinformatics 21(1): 1-1 (2005)
27EEBenjamin Schuster-Böckler, Alex Bateman: Visualizing profile-profile alignment: pairwise HMM logos. Bioinformatics 21(12): 2912-2913 (2005)
26EEAlex Bateman, Alfonso Valencia: An update from the Bioinformatics Editors. Bioinformatics 21(24): 4319 (2005)
25EERobert D. Finn, Mhairi Marshall, Alex Bateman: iPfam: visualization of protein?Cprotein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21(3): 410-412 (2005)
24EEAlex Bateman, Matthew T. G. Holden, Corin Yeats: The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation. Bioinformatics 21(8): 1301-1303 (2005)
23EEAlex Bateman: Editorial. Nucleic Acids Research 33(Database-Issue): 1 (2005)
22EESam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman: Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33(Database-Issue): 121-124 (2005)
21EENicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)
2004
20EEShane C. Dillon, Alex Bateman: The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases. BMC Bioinformatics 5: 109 (2004)
19EELachlan James M. Coin, Alex Bateman, Richard Durbin: Enhanced protein domain discovery using taxonomy. BMC Bioinformatics 5: 56 (2004)
18EEAlex Bateman, Alfonso Valencia: New Leadership for Bioinformatics. Bioinformatics 20(12): 1821 (2004)
17 Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
2003
16EEDavid J. Studholme, Neil D. Rawlings, Alan J. Barrett, Alex Bateman: A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised. BMC Bioinformatics 4: 17 (2003)
15EEAlex Bateman, Valerie A. Kickhoefer: The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins. BMC Bioinformatics 4: 49 (2003)
14 Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)
13 Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy: Rfam: an RNA family database. Nucleic Acids Research 31(1): 439-441 (2003)
2002
12EEAlex Bateman: The SGS3 protein involved in PTGS finds a family. BMC Bioinformatics 3: 21 (2002)
11 Kevin L. Howe, Alex Bateman, Richard Durbin: QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics 18(11): 1546-1547 (2002)
10 Sam Griffiths-Jones, Alex Bateman: The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics 18(9): 1243-1249 (2002)
9 Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings in Bioinformatics 3(3): 225-235 (2002)
8 Alex Bateman, Daniel H. Haft: HMM-based databases in InterPro. Briefings in Bioinformatics 3(3): 236-245 (2002)
7 Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
2001
6 Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, J. Shi, Hiroki Shirai, Tom L. Blundell: HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinformatics 17(8): 748-749 (2001)
5 Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research 29(1): 37-40 (2001)
2000
4 Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov: InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 16(12): 1145-1150 (2000)
3 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
1999
2 Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
1998
1 Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)

Coauthor Index

1Rolf Apweiler [4] [5] [9] [14] [21] [35] [45]
2Terri K. Attwood (Teresa K. Attwood) [4] [5] [9] [14] [21] [35] [45]
3Amos Bairoch [4] [5] [9] [14] [21] [35] [45]
4Paul I. W. de Bakker [6]
5Daniel Barrell [14]
6Alan J. Barrett [16]
7Andreas Biegert [48]
8David Binns [9] [14] [21] [35] [45]
9Ewan Birney [1] [2] [3] [4] [5] [7]
10Margaret Biswas [4] [5] [9] [14]
11Tom L. Blundell [6]
12Peer Bork [9] [14] [21] [35] [45]
13Paul Bradley [9] [14] [21]
14Philipp Bucher [4] [5] [9] [14]
15Phillip Bucher [21]
16Virginie Buillard [35]
17David F. Burke [6]
18Goran Ceric [41]
19Lorenzo Cerutti [4] [5] [7] [21] [35]
20Penny C. Coggill [41]
21Lachlan James M. Coin [17] [19]
22Richard R. Copley [9] [14] [21] [35]
23Florence Corpet [4] [5]
24Emmanuel Courcelle [9] [14] [21] [35]
25Michael D. R. Croning [4] [5]
26Ujjwal Das [14] [21] [35] [45]
27Jennifer Daub [46]
28Louise Daugherty [35] [45]
29Mark Dibley [35]
30Shane C. Dillon [20]
31Stijn van Dongen [30]
32Lauranne Duquenne [45]
33Richard Durbin [1] [2] [3] [4] [5] [7] [9] [11] [14] [17] [19] [21] [29]
34Sean R. Eddy [1] [2] [3] [7] [13] [17] [22] [29] [41] [46]
35Anton J. Enright [30]
36Laurence Ettwiller [7]
37Laurent Falquet [4] [5] [9] [14]
38Robert D. Finn [2] [17] [25] [29] [35] [37] [40] [41] [43] [45] [46] [48]
39Wolfgang Fleischmann [4] [5] [9] [14] [21] [35]
40Kristoffer Forslund [41]
41Paul P. Gardner [46]
42Julian Gough [21] [35] [45]
43Jérôme Gouzy [4] [5] [9]
44Sam Griffiths-Jones [7] [9] [10] [13] [14] [17] [22] [29] [30] [46]
45Russell J. Grocock [30]
46Daniel H. Haft [8] [9] [14] [21] [35] [45]
47Nicola Harte [14] [21]
48Henning Hermjakob [4] [5] [9]
49Matthew T. G. Holden [24]
50Volker Hollich [17] [29]
51Hans-Rudolf Hotz [41]
52Kevin L. Howe [3] [7] [11]
53Nicolas Hulo [4] [5] [9] [14] [21] [35] [45]
54Sarah Hunter [35] [45]
55Inge Jonassen [4] [5]
56Daniel Kahn [4] [5] [9] [14] [21] [35] [45]
57Alexander Kanapin [4] [5] [9] [14] [21] [35]
58Youla Karavidopoulou [4] [5]
59Anish Kejariwal [35]
60Elizabeth Kelly [45]
61Ajay Khanna [13] [17] [22] [29]
62Valerie A. Kickhoefer [15]
63Diana L. Kolbe [46]
64Maria Krestyaninova [9] [14] [21]
65Alberto Labarga [35]
66Petra S. Langendijk-Genevaux [35]
67Timo Lassmann [29]
68Aurélie Laugraud [45]
69Ivica Letunic [9] [14] [21] [35] [45]
70Stinus Lindgreen [46]
71David Lonsdale [14] [21] [35] [45]
72Rodrigo Lopez [4] [5] [9] [14] [21] [35] [45]
73Martin Madera [21] [35] [45]
74Mhairi Marshall [7] [13] [17] [22] [25] [29]
75Beate Marx [4] [5]
76John Maslen [21] [35] [45]
77Craig McAnulla [35] [45]
78Jennifer McDowall [21] [35] [45]
79Ricardo Núñez Miguel [6]
80Jaina Mistry [29] [35] [40] [41] [45]
81Alex Mitchell [21] [35] [45]
82Kenji Mizuguchi [6]
83Simon Moxon [17] [22] [29]
84Nicola J. Mulder [4] [5] [9] [14] [21] [35] [45]
85Darren A. Natale [45]
86Eric P. Nawrocki [46]
87Anastasia N. Nikolskaya [21] [35]
88Thomas M. Oinn (Tom Oinn) [4] [5]
89Sandra E. Orchard [14] [21] [35]
90Sue Orchard [9]
91Christine A. Orengo [35] [45]
92Marco Pagni [4] [5] [9] [14] [21]
93Robert Petryszak [35]
94David Peyruc [9] [14]
95Chris P. Ponting [9] [14] [21]
96John Quackenbush [47]
97Emmanuel Quevillon [21]
98Antony F. Quinn [45]
99Neil D. Rawlings [16]
100Stephen John Sammut [41] [43]
101Benjamin Schuster-Böckler [27] [29] [39]
102Jeremy D. Selengut [14] [21] [35] [45]
103Florence Servant [4] [5] [9] [14]
104J. Shi [6]
105Hiroki Shirai [6]
106Christian J. A. Sigrist [4] [5] [9] [14] [21] [35] [45]
107Ville Silventoinen [14] [21]
108Peter J. Sims [48]
109Johannes Söding [48]
110Erik L. L. Sonnhammer [1] [2] [3] [7] [17] [29] [41]
111David J. Studholme [16] [17] [21]
112John G. Tate [41] [46]
113Manjula Thimma [45]
114Paul D. Thomas [35] [45]
115Alfonso Valencia [18] [26] [28] [32] [33] [38]
116Franck Valentin [35] [45]
117Robert Vaughan [14] [21]
118Therese Wiedmer [48]
119Adam C. Wilkinson [46]
120Derek Wilson [35] [45]
121Matt Wood [49]
122Jonathan D. Wren [44]
123Cathy H. Wu [21] [35] [45]
124Corin Yeats [17] [24] [35] [45]
125Evgeni M. Zdobnov [4] [5] [14]

Colors in the list of coauthors

Home | Conferences | Journals | Series | FAQ — Search: Faceted | Complete | Author
Copyright © Tue Nov 3 08:52:44 2009 by Michael Ley (ley@uni-trier.de)