SC 2005: Seattle, WA, USA

• Chung-Hsing Hsu, Wu-chun Feng:
  A Power-Aware Run-Time System for High-Performance Computing. 1
  
• Ling Zhuo, Viktor K. Prasanna:
  High Performance Linear Algebra Operations on Reconfigurable Systems. 2
  
• Nico Galoppo, Naga K. Govindaraju, Michael Henson, Dinesh Manocha:
  LU-GPU: Efficient Algorithms for Solving Dense Linear Systems on Graphics Hardware. 3
  
• Tiankai Tu, David R. O'Hallaron, Omar Ghattas:
  Scalable Parallel Octree Meshing for TeraScale Applications. 4
  
• Benjamin Bergen, Frank Hülsemann, Ulrich Rüde:
  Is 1.7 x 10^10 Unknowns the Largest Finite Element System that Can Be Solved Today? 5
  
• Fan-Yin Tzeng, Kwan-Liu Ma:
  Intelligent Feature Extraction and Tracking for Visualizing Large-Scale 4D Flow Simulations. 6
  
• Mario Nakazawa, David K. Lowenthal, Wenduo Zhou:
  The MHETA Execution Model for Heterogeneous Clusters. 7
  
• Bin Lin, Peter A. Dinda:
  VSched: Mixing Batch And Interactive Virtual Machines Using Periodic Real-time Scheduling. 8
  
• Roberto Gioiosa, José Carlos Sancho, Song Jiang, Fabrizio Petrini:
  Transparent, Incremental Checkpointing at Kernel Level: a Foundation for Fault Tolerance for Parallel Computers. 9
  
• Tsutomu Ikegami, Toyokazu Ishida, Dmitri G. Fedorov, Kazuo Kitaura, Yuichi Inadomi, Hiroaki Umeda, Mitsuo Yokokawa, Satoshi Sekiguchi:
  Full Electron Calculation Beyond 20, 000 Atoms: Ground Electronic State of Photosynthetic Proteins. 10
  
• Daniel Reiter Horn, Mike Houston, Pat Hanrahan:
  ClawHMMER: A Streaming HMMer-Search Implementation. 11
  
• Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova:
  Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. 12
  
• Swarup Kumar Sahoo, Sriram Krishnamoorthy, Rajkiran Panuganti, P. Sadayappan:
  Integrated Loop Optimizations for Data Locality Enhancement of Tensor Contraction Expressions. 13
  
• John Cavazos, Michael F. P. O'Boyle:
  Automatic Tuning of Inlining Heuristics. 14
  
• Amir Kamil, Jimmy Su, Katherine A. Yelick:
  Making Sequential Consistency Practical in Titanium. 15
  
• Kevin J. Barker, Alan F. Benner, Raymond R. Hoare, Adolfy Hoisie, Alex K. Jones, Darren J. Kerbyson, Dan Li, Rami G. Melhem, Ramakrishnan Rajamony, Eugen Schenfeld, Shuyi Shao, Craig B. Stunkel, Peter Walker:
  On the Feasibility of Optical Circuit Switching for High Performance Computing Systems. 16
  
• John Shalf, Shoaib Kamil, Leonid Oliker, David Skinner:
  Analyzing Ultra-Scale Application Communication Requirements for a Reconfigurable Hybrid Interconnect. 17
  
• Ronald P. Luijten, Cyriel Minkenberg, B. Roe Hemenway, Michael Sauer, Richard Grzybowski:
  Viable opto-electronic HPC interconnect fabrics. 18
  
• Michael R. Head, Madhusudhan Govindaraju, Aleksander Slominski, Pu Liu, Nayef Abu-Ghazaleh, Robert van Engelen, Kenneth Chiu, Michael J. Lewis:
  A Benchmark Suite for SOAP-based Communication in Grid Web Services. 19
  
• Marty A. Humphrey, Glenn S. Wasson, Yuliyan Kiryakov, Sang-Min Park, David Del Vecchio, Norm Beekwilder:
  Alternative Software Stacks for OGSA-based Grids. 20
  
• Nayef Abu-Ghazaleh, Michael J. Lewis:
  Differential Deserialization for Optimized SOAP Performance. 21
  
• Zhengting Gan, Robert J. Harrison:
  Calibrating quantum chemistry: A multi-teraflop, parallel-vector, full-configuration interaction program for the Cray-X1. 22
  
• Manojkumar Krishnan, Yuri Alexeev, Theresa L. Windus, Jarek Nieplocha:
  Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global Arrays. 23
  
• François Gygi, Robert K. Yates, Juergen Lorenz, Erik W. Draeger, Franz Franchetti, Christoph W. Ueberhuber, Bronis R. de Supinski, Stefan Kral, John A. Gunnels, James C. Sexton:
  Large-Scale First-Principles Molecular Dynamics simulations on the BlueGene/L Platform using the Qbox code. 24
  
• Andy Yoo, Edmond Chow, Keith W. Henderson, Will McLendon III, Bruce Hendrickson, Ümit V. Çatalyürek:
  A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L. 25
  
• Rupak Biswas, M. Jahed Djomehri, Robert Hood, Haoqiang Jin, Cetin C. Kiris, Subhash Saini:
  An Application-Based Performance Characterization of the Columbia Supercluster. 26
  
• Justin L. Tripp, Anders A. Hansson, Maya Gokhale, Henning S. Mortveit:
  Partitioning Hardware and Software for Reconfigurable Supercomputing Applications: A Case Study. 27
  
• Hiroshi Nakashima, Hiroshi Nakamura, Mitsuhisa Sato, Taisuke Boku, Satoshi Matsuoka, Daisuke Takahashi, Yoshihiko Hotta:
  MegaProto: 1 TFlops/10kW Rack Is Feasible Even with Only Commodity Technology. 28
  
• Mattan Erez, Nuwan Jayasena, Timothy J. Knight, William J. Dally:
  Fault Tolerance Techniques for the Merrimac Streaming Supercomputer. 29
  
• Humaira Kamal, Brad Penoff, Alan Wagner:
  SCTP versus TCP for MPI. 30
  
• Yunhong Gu, Robert L. Grossman:
  Supporting Configurable Congestion Control in Data Transport Services. 31
  
• Hyungsoo Jung, Dongin Shin, Hyuck Han, Jai Wug Kim, Heon Young Yeom, Jongsuk Lee:
  Design and Implementation of Multiple Fault-Tolerant MPI over Myrinet (M^3). 32
  
• Nandini Kappiah, Vincent W. Freeh, David K. Lowenthal:
  Just In Time Dynamic Voltage Scaling: Exploiting Inter-Node Slack to Save Energy in MPI Programs. 33
  
• Rong Ge, Xizhou Feng, Kirk W. Cameron:
  Performance-constrained Distributed DVS Scheduling for Scientific Applications on Power-aware Clusters. 34
  
• Lorin Hochstein, Jeffrey Carver, Forrest Shull, Sima Asgari, Victor R. Basili:
  Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers. 35
  
• Florentina I. Popovici, John Wilkes:
  Profitable services in an uncertain world. 36
  
• David Petrou, Garth A. Gibson, Gregory R. Ganger:
  Scheduling speculative tasks in a compute farm. 37
  
• Catalin Dumitrescu, Ioan Raicu, Ian T. Foster:
  DI-GRUBER: A Distributed Approach to Grid Resource Brokering. 38
  
• Karen L. Karavanic, John May, Kathryn Mohror, Brian Miller, Kevin A. Huck, Rashawn L. Knapp, Brian Pugh:
  Integrating Database Technology with Comparison-based Parallel Performance Diagnosis: The PerfTrack Performance Experiment Management Tool. 39
  
• Leo T. Yang, Xiaosong Ma, Frank Mueller:
  Cross-Platform Performance Prediction of Parallel Applications Using Partial Execution. 40
  
• Kevin A. Huck, Allen D. Malony:
  PerfExplorer: A Performance Data Mining Framework For Large-Scale Parallel Computing. 41
  
• Y. Dora Cai, Ruth A. Aydt, Robert Brunner:
  Optimized Data Loading for a Multi-Terabyte Sky Survey Repository. 42
  
• Volkan Akcelik, George Biros, Andrei Draganescu, Judith Hill, Omar Ghattas, Bart G. van Bloemen Waanders:
  Dynamic Data-Driven Inversion For Terascale Simulations: Real-Time Identification Of Airborne Contaminants. 43
  
• Susumu Yamada, Toshiyuki Imamura, Masahiko Machida:
  16.447 TFlops and 159-Billion-dimensional Exact-diagonalization for Trapped Fermion-Hubbard Model on the Earth Simulator. 44
  
• Meng-Shiou Wu, Ricky A. Kendall, Kyle Wright, Zhao Zhang:
  Performance Modeling and Tuning Strategies of Mixed Mode Collective Communications. 45
  
• Vinod Tipparaju, Jarek Nieplocha:
  Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern Networks. 46
  
• Mathijs den Burger, Thilo Kielmann, Henri E. Bal:
  Balanced Multicasting: High-throughput Communication for Grid Applications. 46
  
• Laura Carrington, Michael Laurenzano, Allan Snavely, Roy L. Campbell, Larry P. Davis:
  How Well Can Simple Metrics Represent the Performance of HPC Applications? 48
  
• Erich Strohmaier, Hongzhang Shan:
  Apex-Map: A Global Data Access Benchmark to Analyze HPC Systems and Parallel Programming Paradigms. 49
  
• Jonathan Weinberg, Michael O. McCracken, Erich Strohmaier, Allan Snavely:
  Quantifying Locality In The Memory Access Patterns of HPC Applications. 50
  
• Douglas Thain:
  Identity Boxing: A New Technique for Consistent Global Identity. 51
  
• Mumtaz Siddiqui, Alex Villazón, Jürgen Hofer, Thomas Fahringer:
  GLARE: A Grid Activity Registration, Deployment and Provisioning Framework. 52
  
• Phil Andrews, Patricia A. Kovatch, Chris Jordan:
  Massive High-Performance Global File Systems for Grid computing. 53
  
• William E. Allcock, John Bresnahan, Rajkumar Kettimuthu, Michael Link:
  The Globus Striped GridFTP Framework and Server. 54
  
• Douglas Thain, Sander Klous, Justin M. Wozniak, Paul Brenner, Aaron Striegel, Jesús A. Izaguirre:
  Separating Abstractions from Resources in a Tactical Storage System. 55
  
• Sudharshan Vazhkudai, Xiaosong Ma, Vincent W. Freeh, Jonathan W. Strickland, Nandan Tammineedi, Stephen L. Scott:
  FreeLoader: Scavenging Desktop Storage Resources for Scientific Data. 56
  
• Vahid Tabatabaee, Ananta Tiwari, Jeffrey K. Hollingsworth:
  Parallel Parameter Tuning for Applications with Performance Variability. 57
  
• Anthony Danalis, Ki-Yong Kim, Lori L. Pollock, D. Martin Swany:
  Transformations to Parallel Codes for Communication-Computation Overlap. 58
  
• Jeffrey Odom, Jeffrey K. Hollingsworth, Luiz De Rose, Kattamuri Ekanadham, Simone Sbaraglia:
  Using Dynamic Tracing Sampling to Measure Long Running Programs. 59
  
• Andrew W. Cook, William H. Cabot, Peter L. Williams, Brian J. Miller, Bronis R. de Supinski, Robert K. Yates, Michael L. Welcome:
  Tera-Scalable Algorithms for Variable-Density Elliptic Hydrodynamics with Spectral Accuracy. 60
  
• Dimitri J. Mavriplis, Michael J. Aftosmis, Marsha J. Berger:
  High Resolution Aerospace Applications using the NASA Columbia Supercomputer. 61
  
• Leonid Oliker, Jonathan Carter, Michael Wehner, Andrew Canning, Stéphane Ethier, Art Mirin, David Parks, Patrick H. Worley, Shigemune Kitawaki, Yoshinori Tsuda:
  Leading Computational Methods on Scalar and Vector HEC Platforms. 62
  
• Thomas L. Sterling:
  Towards a Technology and Architecture Hybrid? 63
  
• Arnold H. Silver:
  Superconductor Technology for High-End Computing System Issues and Technology Roadmap. 64
  
• Mikail N. Dorojevets:
  Opportunities, Challenges, and Projections for Superconductor RSFQ Microprocessors. 65
  
• Theodore Van Duzer:
  Cryogenic Memories for RSFQ Ultra-High-Speed Processor. 66
  
• Burton J. Smith:
  System Balance and Fast Clocks. 67
  
• Yike Guo, Jian Guo Liu, Moustafa Ghanem, Kyran Mish, Vasa Curcin, Christian Haselwimmer, D. Sotiriou, K. K. Muraleetharan, L. Taylor:
  Bridging the Macro and Micro: A Computing Intensive Earthquake Study Using Discovery Net. 68
  
• Robert L. Grossman, Michal Sabala, Anushka Anand, Steve Eick, Leland Wilkinson, Pei Zhang, John Chaves, Steve Vejcik, John F. Dillenburg, Peter C. Nelson, Doug Rorem, Javid Alimohideen, Jason Leigh, Michael E. Papka, Rick L. Stevens:
  Real Time Change Detection and Alerts from Highway Traffic Data. 69
  
• Shantenu Jha, Peter V. Coveney, Matt J. Harvey:
  SPICE: Simulated Pore Interactive Computing Environment. 70
  
• J. Stephen Downie, Joe Futrelle:
  Terascale music mining. 71
  
• Kurt Stockinger, Kesheng Wu, Scott Campbell, Stephen Lau, Mike Fisk, Eugene M. Gavrilov, Alex Kent, Christopher E. Davis, Rick Olinger, Robert J. Young, Jim Prewett, Paul Weber, Thomas P. Caudell, E. Wes Bethel, Steve Smith:
  Network Traffic Analysis With Query Driven Visualization SC 2005 HPC Analytics Results. 72
  
• Earl P. N. Duque, Steve M. Legensky:
  Visualization of Large-Scale Unsteady Computational Fluid Dynamics Datasets. 73
  
• Antonio Sanfilippo, Richard May, Gary Danielson, Bob Baddeley, Rick Riensche, Skip Kirby, Sharon Collins, Susan M. Thornton, Kenneth Washington, Matt Schrager, Jamie Van Randwyk, Bob Borchers, Doug Gatchell:
  An Adaptive Visual Analytics Platform for Mobile Devices. 74